PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g26190.2
Common NameLR48_Vigan02g008700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 217aa    MW: 24405.4 Da    PI: 7.9852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g26190.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1675125255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +g+++AeIrd +    +  r++lg+f+ ae Aa a+++a+  ++g
  Vang06g26190.2  75 SFRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDNAEAAALAYDQAAFVMRG 125
                     59*******.**********422...25**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-3475139IPR001471AP2/ERF domain
PROSITE profilePS5103221.90475133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2875133IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2176134IPR016177DNA-binding domain
PRINTSPR003672.3E-97687IPR001471AP2/ERF domain
CDDcd000181.71E-1776132No hitNo description
PfamPF008471.2E-1176125IPR001471AP2/ERF domain
PRINTSPR003672.3E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDSSSILYSS NSSESSVGSP HHHLPFNEND PEEMLLYGMI TSYQEQNNSC KLIIKEKEVN  60
SQQHKSSSGN SNGKSFRGVR RRPWGKFAAE IRDSTRHGIR VWLGTFDNAE AAALAYDQAA  120
FVMRGSAAVL NFSVEKVKES LRDMDCSFSQ LEGCSPVVAL KRRHSLRRKM TTKKKKEETQ  180
ESDSVRLENV VVLEDLGKEY LEQLLMMSSS DARCTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2671132162ATERF1
3gcc_A2e-2671132162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160175KRRHSLRRKMTTKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513234.11e-119PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-74ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9TU531e-161A0A0L9TU53_PHAAN; Uncharacterized protein
STRINGGLYMA02G00870.11e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-58ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]